Candida Auris: Which Antifungal Treatments Still Work?

✓ Medically reviewed | Published: | Evidence level: 1A
CDC reporting on antimicrobial resistance highlights Candida auris, a fungus that spread during the pandemic and can cause difficult-to-treat infections. Established antifungals remain central to treatment, while investigational options require careful interpretation of limited clinical evidence.
📅 Published:
✓ Reviewed by iMedic Medical Editorial Team
📄 Pharmacology

Quick Facts

US Cases, 2019–2022
Nearly fivefold increase
Fosmanogepix Trial Size
9 adults
Trial Comparison Group
None

Why does Candida auris matter after the COVID-19 pandemic?

Quick answer: Candida auris combines healthcare transmission with antifungal resistance, creating a serious treatment challenge for vulnerable patients.

The CDC's review of COVID-19 and antimicrobial resistance documents a sharp increase in reported US clinical cases of Candida auris: nearly fivefold between 2019 and 2022. These are historical surveillance findings, rather than a measurement of infections occurring this October. During the pandemic, staffing shortages, prolonged hospital stays and greater use of invasive devices strained infection prevention. [CDC pandemic resistance review](https://www.cdc.gov/antimicrobial-resistance/data-research/threats/covid-19.html)

C. auris is a yeast that can cause bloodstream and other invasive infections. Patients requiring complex care, central lines or ventilators are particularly vulnerable. It can also persist on patients' skin without causing illness and spread through contaminated equipment and surfaces. Consequently, effective medicines must be accompanied by reliable identification, screening and infection control. [CDC clinical overview](https://www.cdc.gov/candida-auris/hcp/clinical-overview/index.html)

Which antifungal medicines are recommended for Candida auris?

Quick answer: CDC recommends an echinocandin as initial treatment for most adults with clinical C. auris infection.

The recommended initial options include micafungin, caspofungin and anidulafungin, administered intravenously. Most US strains remain susceptible to this drug class, but reports of resistance are increasing. Laboratory susceptibility testing helps clinicians assess which medicines may work, while monitoring establishes whether the patient is responding. Treatment selection also depends on individual clinical circumstances. [CDC treatment guidance](https://www.cdc.gov/candida-auris/hcp/clinical-care/index.html)

When testing identifies echinocandin resistance, or a patient fails to improve after five days, CDC advises considering liposomal amphotericin B. Strains resistant to all three major antifungal classes create an especially difficult problem. CDC identifies investigational treatments, including fosmanogepix, as potential options through expanded access pathways. These decisions require specialist involvement because evidence for resistant infections remains limited. [CDC guidance on resistant infections](https://www.cdc.gov/candida-auris/hcp/clinical-care/index.html)

What does the fosmanogepix trial actually show?

Quick answer: A small uncontrolled trial found encouraging outcomes, but could not establish whether fosmanogepix outperforms existing treatment.

A phase 2 study published in Antimicrobial Agents and Chemotherapy in 2023 enrolled nine adults with C. auris bloodstream infections. All received intravenous fosmanogepix. An independent committee assessed eight participants as treatment successes at the end of therapy, and eight were alive at day 30. These are preliminary findings from an earlier study, not newly announced results. [Published phase 2 trial](https://pmc.ncbi.nlm.nih.gov/articles/PMC10190264/)

The study had no comparison group, and every participant had received an echinocandin before fosmanogepix. Six participants had sustained treatment success two weeks after therapy ended; one experienced relapse and another died during follow-up. The small sample cannot reliably establish comparative benefit or detect uncommon adverse effects. Its practical contribution is evidence supporting further investigation, rather than proof that fosmanogepix should replace established antifungals. [Trial outcomes and limitations](https://pmc.ncbi.nlm.nih.gov/articles/PMC10190264/)

Frequently Asked Questions

No. A positive skin screening result can indicate colonization without illness. CDC recommends treating clinical infection, while using infection control measures for colonized patients. [CDC clinical overview](https://www.cdc.gov/candida-auris/hcp/clinical-overview/index.html)

Yes. Patients may remain colonized after an infection resolves. Healthcare teams should continue appropriate infection control, including hand hygiene and cleaning shared equipment. [CDC clinical overview](https://www.cdc.gov/candida-auris/hcp/clinical-overview/index.html)

References

  1. Centers for Disease Control and Prevention. [COVID-19 & Antimicrobial Resistance](https://www.cdc.gov/antimicrobial-resistance/data-research/threats/covid-19.html). February 5, 2025.
  2. Centers for Disease Control and Prevention. [Clinical Overview of Candida auris](https://www.cdc.gov/candida-auris/hcp/clinical-overview/index.html). February 26, 2026.
  3. Centers for Disease Control and Prevention. [Clinical Treatment of C. auris infections](https://www.cdc.gov/candida-auris/hcp/clinical-care/index.html). October 6, 2026.
  4. Vazquez JA, et al. [Clinical Efficacy and Safety of a Novel Antifungal, Fosmanogepix, in Patients with Candidemia Caused by Candida auris: Results from a Phase 2 Trial](https://doi.org/10.1128/aac.01419-22). Antimicrobial Agents and Chemotherapy. 2023;67(5):e01419-22.